PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96392.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 229aa MW: 24963.9 Da PI: 5.9808

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.3	1.1e-42	51	150	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++ PON96392.1 51 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQA 149 7**********************************************************************************************9997 PP DUF260 100 e 100 e PON96392.1 150 E 150 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MECSTETNNT TTTTTSSSPP LASQYSTSPS SSPPQTPNPN PNPNPPIVIS PCAACKILRR 60 RCADKCVLAP YFPPTEPAKF TIAHRVFGAS NIIKFLQELP ESQRADAVSS MVYEASARIR 120 DPVYGCAGAI CQLQKQVSEL QAQLAKAQAE VVNMQCQQAN LVAFLCMEVA QSQQGYNDSP 180 PHHHHQQQSL DGPFNNITSP LMTSNQSNNS LSFLDDNNNL GSLWEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-61	LBD family protein