PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96628.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 496aa MW: 53160.8 Da PI: 8.5783

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.5e-11	53	79	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ PON96628.1 53 PGVPNCVYYMRTGYCGYGIRCRYNHPR 79 5789*********************96 PP
2	zf-CCCH	40	6.6e-13	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ PON96628.1 100 EPVCQYYLKTGTCKFGASCKFHHPK 124 789********************96 PP
3	zf-CCCH	38.8	1.6e-12	144	170	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G +CkF H++ PON96628.1 144 PGEAECSYYLKTGQCKFGVTCKFDHPQ 170 5789*********************97 PP
4	zf-CCCH	36.1	1.1e-11	326	352	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H++ PON96628.1 326 PGEPDCQYYLKTGDCKFGSSCRYHHPR 352 5789*********************96 PP
5	zf-CCCH	35.5	1.6e-11	373	398	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ PON96628.1 373 GVQPCTFYLQNGHCKFGASCKFDHPM 398 5689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MALYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWHLGLT SGGGGGESYP ERPGVPNCVY 60 YMRTGYCGYG IRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF 120 HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFDHPQ PAGTSVTASA 180 PQFYPPVQSP SVPMPDQFVG PSTSLRVARP PLLPGSYVQG AYGPVLFPPG VVPMPGWTPY 240 SIFRVDDTLT VSIAIPEWYM RFSPDTAPVS PVLSPGAQPT VGAASMYGVT HLPSSTAALA 300 RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CQYYLKTGDC KFGSSCRYHH PRDRVVPRTN 360 CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV 420 GSLLATLAPS STSSDLRPDY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSAPL 480 SSSRSTRQGG EVRRSS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MALYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWHLGLT SGGGGGESYP ERPGVPNCVY  60
YMRTGYCGYG IRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF  120
HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFDHPQ PAGTSVTASA  180
PQFYPPVQSP SVPMPDQFVG PSTSLRVARP PLLPGSYVQG AYGPVLFPPG VVPMPGWTPY  240
SIFRVDDTLT VSIAIPEWYM RFSPDTAPVS PVLSPGAQPT VGAASMYGVT HLPSSTAALA  300
RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CQYYLKTGDC KFGSSCRYHH PRDRVVPRTN  360
CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV  420
GSLLATLAPS STSSDLRPDY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSAPL  480
SSSRSTRQGG EVRRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein