PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97092.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 26059.9 Da PI: 10.0054

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.6	3e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye++s PON97092.1 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59 8***********************************************86 PP
2	K-box	78.4	1.8e-26	78	170	8	98
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++++ + +q+e+a L+ ++++Lq++ R+l+G++L L++keLq+Le+qLe slk iR kK+++l+++i+el +k + +++en +L kk+ PON97092.1 78 QllNSTSEVKLWQREVAILRHQLQSLQENYRQLMGKELYGLNMKELQNLESQLEISLKGIRMKKEQMLTDEIQELIRKGNLIHQENVDLYKKV 170 1347889999********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYEFAST 60 SMKSVMERYN KSKDEHQQLL NSTSEVKLWQ REVAILRHQL QSLQENYRQL MGKELYGLNM 120 KELQNLESQL EISLKGIRMK KEQMLTDEIQ ELIRKGNLIH QENVDLYKKV NLIRQENVEL 180 QKKVYGTRDV TATTSGNNFI SYSLDNVEES NIPIHLQLSQ PSQQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-103	MIKC_MADS family protein