PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97233.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

YABBY

Protein Properties

Length: 182aa MW: 20137.9 Da PI: 10.0961

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	152.8	3.1e-47	14	161	2	163
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 d s+++Cyv+CnfC+t+lav++P++ l+ +vtv+CGhC++l ++ + q+ +h + ++ + + s ++ s+s+s ss + PON97233.1 14 DFSPPSDHLCYVRCNFCSTVLAVALPYKRLLDTVTVKCGHCSNLSFLSTRPPLQTAQFLDH------P-------SSLSGFCSDFNRKGSSSSSSSS-S 98 567789***********************************977555555555554454......1.......1122222222222222222222.2 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +++++ +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + PON97233.1 99 TNTSTEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 161 24566677899999*********************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MNQLVQDEKV SNMDFSPPSD HLCYVRCNFC STVLAVALPY KRLLDTVTVK CGHCSNLSFL 60 STRPPLQTAQ FLDHPSSLSG FCSDFNRKGS SSSSSSSSTN TSTEPLSPKA PFVVKPPEKK 120 HRLPSAYNRF MKEEIQRIKA ANPEIPHREA FSAAAKNWAR YIPHPPAASA SGSNKRVRKQ 180 VL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	4e-60	YABBY family protein