PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97239.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 261aa MW: 29469.3 Da PI: 7.6092

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gklye++s PON97239.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSARGKLYEFCS 59 79***********************************************96 PP
2	K-box	90.1	4.2e-30	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l +++es +qe+ +Lk+++e L+r+qR+llGedLe L+lk+L qLe++L++slk+iRs+K +++++++++l+ ke+ l e+n++L++klee PON97239.1 82 LPGKDTESNYQEYLRLKAKVEVLRRTQRNLLGEDLEHLELKDLGQLEHKLDTSLKQIRSTKIQHMIDELSHLRGKEETLVEANNELKRKLEE 173 6778899**********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSA RGKLYEFCSG 60 SSMAKTLEKY ERCSYGAQEG KLPGKDTESN YQEYLRLKAK VEVLRRTQRN LLGEDLEHLE 120 LKDLGQLEHK LDTSLKQIRS TKIQHMIDEL SHLRGKEETL VEANNELKRK LEEISGLIHQ 180 PSEAREQNVT YTHHPAQPVE LSFEPLQRNN NSNTNNNTIE LHIGSYGTIN SGVGDQVNVA 240 TANSVQNLMA SNSVDGGCFD L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	2e-83	MIKC_MADS family protein