PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97241.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28529.6 Da PI: 8.4522

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.8e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+E+SvLCdaevavi+fs++gkl+eys+ PON97241.1 9 KRIENKINRQVTFTKRRNGLLKKAHEISVLCDAEVAVIVFSHKGKLFEYST 59 79***********************************************96 PP
2	K-box	94	2.4e-31	85	176	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++ + +++ e+++L ++ie Lqr+ Rh+lGedL+sL+lk+Lq+LeqqL+ slk iR++Kn+l+ e ++ qkkek+l++en L+kk++e PON97241.1 85 SEAHLQGNWTVEYSRLTAKIELLQRNRRHYLGEDLDSLNLKDLQSLEQQLDASLKIIRARKNQLMNETLSAYQKKEKALRDENSLLEKKIKE 176 44445679*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVQLKR IENKINRQVT FTKRRNGLLK KAHEISVLCD AEVAVIVFSH KGKLFEYSTD 60 SCMEKILERY ERYSYAERQL VTMDSEAHLQ GNWTVEYSRL TAKIELLQRN RRHYLGEDLD 120 SLNLKDLQSL EQQLDASLKI IRARKNQLMN ETLSAYQKKE KALRDENSLL EKKIKEKEKN 180 VAQVEQMQWG QQNHGPSTSS FMLPQPLPCL NIGGSYEQEA PELRRNDLDL TLEPLYPCHL 240 GCFDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	1e-105	MIKC_MADS family protein