PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97266.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 308aa    MW: 35525.6 Da    PI: 7.2021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll ++++ +G g+W++ ++  g+ R++k+c++rw +yl
       PON97266.1 14 RGPWTPREDTLLTNYIQAHGEGHWRSLPKNAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.46e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
       PON97266.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGRAPCCSKV GLHRGPWTPR EDTLLTNYIQ AHGEGHWRSL PKNAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSRRLISQG  120
TDPNTHKKLL GHVVQETKGR SNKKSKTSKS KAKKKAEKPI RDHDHHVEPE KPKVHLPKPI  180
RVSSFSMVRN YSFEGIKNSN NIINVTTCES SSQEKGDQDH EVDDVPWLSF KEDDHDHLVN  240
DNDNDQCQDQ PYHDHDDHLV INGTSTTTTD HNSTLEKLYE EYLQLLKTEE YDHHDQVELD  300
SFAESLLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-69MYB family protein