PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97275.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 169aa    MW: 19462.4 Da    PI: 6.6225
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.7e-40171161100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaC++lrrkC ++Cvl+pyfp+++ +kfa vhk+FGasnv+k+++ ++ee+r+d+++++vyeA+ar+rdP+yG++g+i++lq+ +++l+++l+++ +
  PON97275.1  17 PCAACRMLRRKCDRNCVLSPYFPSDEIEKFAGVHKVFGASNVIKMIQMVEEEKRDDTVQAIVYEAKARLRDPIYGSAGTIFHLQRMVNELRSQLESTTA 115
                 7*********************************************************************************************99876 PP

      DUF260 100 e 100
                 +
  PON97275.1 116 Q 116
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MELTGQVPLP RSRVHQPCAA CRMLRRKCDR NCVLSPYFPS DEIEKFAGVH KVFGASNVIK  60
MIQMVEEEKR DDTVQAIVYE AKARLRDPIY GSAGTIFHLQ RMVNELRSQL ESTTAQVMEL  120
QEHRDRLLGI LMNVHYLEFD TLPTMQHVDP LFYGSNSIHD IDPPVSFFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-44LBD family protein