PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97514.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HB-other

Protein Properties

Length: 1100aa MW: 124363 Da PI: 7.3629

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.9	1.1e-05	3	30	30	57
HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57 +e A+ +gLt +q++ WF rR +ek+ PON97514.1 3 MENYAATVGLTYKQIQCWFVERRRREKR 30 5677999********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1100 aa Download sequence
MEMENYAATV GLTYKQIQCW FVERRRREKR ENAITVPLHS TSTEKFTIRG GQNSLGIAAR 60 KVVKRSSSSK HQEISVVKNT IVQDLFAPDY ILKRVFRKDG PPLGVEFDSL PSEELFHCKD 120 PGNSYPSCKE NQRAAKRKKV SKHAVINTVC NDQSAPARKH GMGKGLMTVW RATNPHAGDF 180 PTGVDFANEA TGISSIRKSG SLNPPVQTRK PLKQNIPTKQ GRLRNKLQEK KKHYAKRREV 240 ESYKDANQKR TDKTKCELAL EGGDSQENFH QISMLMDDEE LEVRELQAVT NRPGCSGHFT 300 TGLKGCSLCK DLLVKFPPNS VKMKQPISMQ PWESSPEIVK KLFKVFHFVY TYSLEIDICA 360 FTLDEFAQAF HDKDSLLLGK IHVGLLKLLL YDIKVELNNE SFSHLNESYN YLALLHSVEN 420 QEFSLEFWGR SLNPLTWTEI LRQVLVASGF GSKQIAIRKE SLDKEMHLMV KYGLRPGTLK 480 GELFRILLEQ GNNGLKVSDL AKSFPIVDLK LASTTEELEC LICSVLSSDI TLFEKISSTT 540 YRLRINSILK KVEELQSDSE DSGAVDDGLS DSDTYTSDED SRCDVVKSSL RKVKNLNCQK 600 SKSNISNDCT EIDESHPGES WLLGLLEGEY SDLSIEEKLN AMVALIDLLR AGSRMRMEEP 660 PKTTADCVPS VHHSSSGAKI KRSSAKHQKL LVSSSGHLGQ IQGIKEAYAY WNYHAIDSSA 720 SISKYHERSF DKEKYAKDTE MWVGVHPMQS VFLGSDRRYN RYWLFLGPCN ANDPGHRRVY 780 FESSDDGHWE IIDTKEALCA LLLVLDDRGK REALLIESLE KRQAVLCETM SSRMVNSNGS 840 GHLTYFNQFD LTIVREDSYS PVSDVENNLT MTDVTCDSLP SSGAIVIEVG KGEELKHKWS 900 RLQAFDSWIW SSFYLGLNAV KHGKRSYFDS LTRCECCHDL FWRDEKHCRV CHTTFEIDFD 960 QEERYAIHKA TCMDKEATNM FPKVLSSQIQ SLKAAIYAIE SVMPEGALVG AWTKSAHKLW 1020 VKRLRRTSSL QELMQVLADF IGAINENWLC QCTGIPGSYD GEEIIACFTT LPQTTSAVAL 1080 WLVKLDALIT TNLEKSVLEK

Sequence ? help Back to Top

Protein Sequence Length: 1100 aa Download sequence

MEMENYAATV GLTYKQIQCW FVERRRREKR ENAITVPLHS TSTEKFTIRG GQNSLGIAAR  60
KVVKRSSSSK HQEISVVKNT IVQDLFAPDY ILKRVFRKDG PPLGVEFDSL PSEELFHCKD  120
PGNSYPSCKE NQRAAKRKKV SKHAVINTVC NDQSAPARKH GMGKGLMTVW RATNPHAGDF  180
PTGVDFANEA TGISSIRKSG SLNPPVQTRK PLKQNIPTKQ GRLRNKLQEK KKHYAKRREV  240
ESYKDANQKR TDKTKCELAL EGGDSQENFH QISMLMDDEE LEVRELQAVT NRPGCSGHFT  300
TGLKGCSLCK DLLVKFPPNS VKMKQPISMQ PWESSPEIVK KLFKVFHFVY TYSLEIDICA  360
FTLDEFAQAF HDKDSLLLGK IHVGLLKLLL YDIKVELNNE SFSHLNESYN YLALLHSVEN  420
QEFSLEFWGR SLNPLTWTEI LRQVLVASGF GSKQIAIRKE SLDKEMHLMV KYGLRPGTLK  480
GELFRILLEQ GNNGLKVSDL AKSFPIVDLK LASTTEELEC LICSVLSSDI TLFEKISSTT  540
YRLRINSILK KVEELQSDSE DSGAVDDGLS DSDTYTSDED SRCDVVKSSL RKVKNLNCQK  600
SKSNISNDCT EIDESHPGES WLLGLLEGEY SDLSIEEKLN AMVALIDLLR AGSRMRMEEP  660
PKTTADCVPS VHHSSSGAKI KRSSAKHQKL LVSSSGHLGQ IQGIKEAYAY WNYHAIDSSA  720
SISKYHERSF DKEKYAKDTE MWVGVHPMQS VFLGSDRRYN RYWLFLGPCN ANDPGHRRVY  780
FESSDDGHWE IIDTKEALCA LLLVLDDRGK REALLIESLE KRQAVLCETM SSRMVNSNGS  840
GHLTYFNQFD LTIVREDSYS PVSDVENNLT MTDVTCDSLP SSGAIVIEVG KGEELKHKWS  900
RLQAFDSWIW SSFYLGLNAV KHGKRSYFDS LTRCECCHDL FWRDEKHCRV CHTTFEIDFD  960
QEERYAIHKA TCMDKEATNM FPKVLSSQIQ SLKAAIYAIE SVMPEGALVG AWTKSAHKLW  1020
VKRLRRTSSL QELMQVLADF IGAINENWLC QCTGIPGSYD GEEIIACFTT LPQTTSAVAL  1080
WLVKLDALIT TNLEKSVLEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	28	ERRRRE
2	24	29	RRRREK
3	24	31	RRRREKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-131	HB-other family protein