PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97784.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 308aa    MW: 35346.3 Da    PI: 7.7529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++++G g+W+ ++++ g+ R++k+c+ rw++yl
       PON97784.1 14 RGLWSPEEDEKLIRYINMHGYGCWSNVPEKAGLQRCGKSCRFRWLNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.74e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++  lG+  W+ I+++++ gRt++++k++w+++
       PON97784.1  67 RGRFTQEEQKLIISLHGALGNS-WAHISKYLP-GRTDNEIKNYWNSW 111
                      89******************99.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGHHYCCKER KVKRGLWSPE EDEKLIRYIN MHGYGCWSNV PEKAGLQRCG KSCRFRWLNY  60
LRPDIKRGRF TQEEQKLIIS LHGALGNSWA HISKYLPGRT DNEIKNYWNS WIKKKLYQKP  120
SSTITAIGST STIEQYEYNP QIGFGSSQSE CLQSQHMTTT NAPLPIVEDT SLLCRSSSSP  180
SKQFITGLNS STAGTWTHNT DNNNKENYQH YYQVQALYNY NNNNNNNNEI PPATTSFTIT  240
PSCLDTDYQQ SLIRIEENLV PAGAIESHEN CGTNMINDAN KQLMIINSDD QLVNYPYNNG  300
NIQLHQHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-72MYB family protein