PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97785.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 377aa MW: 42054.5 Da PI: 6.4471

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl PON97785.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.9	8.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ PON97785.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 STSLNSTTTN SITTPSNVTD HHHHHLQMCY NSTQVLDNFL TQSDLTSTKP NTTAHDQAQL 180 FSTSSCGPLF MFDTTSPIEG AAESTTPTTT TTTTNTNNVT RSELIFQDIN LTVGNNLNSS 240 SETTSSLSSS AWNLNQHQVQ ALPPYNNINI HNNSNSNALL LPNTSSFSCN GTAMNVSYLP 300 PLIENMENMV DEEGEMALNY EWVESQQHCP NFLFWENVVV EGSLINGEMN SNGPANNNGL 360 NLGASNTNTM SSFPSSL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
STSLNSTTTN SITTPSNVTD HHHHHLQMCY NSTQVLDNFL TQSDLTSTKP NTTAHDQAQL  180
FSTSSCGPLF MFDTTSPIEG AAESTTPTTT TTTTNTNNVT RSELIFQDIN LTVGNNLNSS  240
SETTSSLSSS AWNLNQHQVQ ALPPYNNINI HNNSNSNALL LPNTSSFSCN GTAMNVSYLP  300
PLIENMENMV DEEGEMALNY EWVESQQHCP NFLFWENVVV EGSLINGEMN SNGPANNNGL  360
NLGASNTNTM SSFPSSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	5e-86	MYB family protein