PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97838.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 181aa    MW: 20378.1 Da    PI: 9.4549
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-183080656
                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++t+ q++ Le+ F  +++++ae++ +LA+klgL  rqV +W+qNrRa++k
  PON97838.1 30 RLTQAQVRLLETSFTTDHKLQAERKLQLAAKLGLAPRQVAIWYQNRRARHK 80
                78***********************************************99 PP
2HD-ZIP_I/II101.57.2e-3329118493
  HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  rrl++ qv+lLE+sF++++kL+ erK +la +Lgl prqva+W+qnrRAR+kt+ +E dy+a++ +++ + +e+++Le+ev  L++el++
   PON97838.1  29 RRLTQAQVRLLETSFTTDHKLQAERKLQLAAKLGLAPRQVAIWYQNRRARHKTQTVELDYRAIQLKLEDVLAEKRSLEREVGMLKQELNK 118
                  8*************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MDFRCINIPT ERQQNQDPAK PSIQQRGIRR LTQAQVRLLE TSFTTDHKLQ AERKLQLAAK  60
LGLAPRQVAI WYQNRRARHK TQTVELDYRA IQLKLEDVLA EKRSLEREVG MLKQELNKAQ  120
EMLLRASGTG SSPVASLPSV ISASGVDDHG SSSSLQNYNY GSGNVAELQA EELYTCLSPW  180
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.14e-27HD-ZIP family protein