PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97992.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family DBB
Protein Properties Length: 225aa    MW: 24389.9 Da    PI: 6.0151
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.3e-071545536
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                 C+ ++  +++ fC+ ++ +lC +C  e+H g
  PON97992.1 15 SCESCQVAKATVFCRPDSAFLCLSCDAEIH-G 45
                7*****999*********************.4 PP
2zf-B_box22.62.1e-0755100241
    zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                 +e++C  +e+ ++   C+ +   lC++C    H +       H +vp
  PON97992.1  55 REWMCVVCEQGPAAVVCNPDAAALCATCDADLH-SpgtrasrHVRVP 100
                 799*******99******************999.4467777777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MESFQALWSA EIRKSCESCQ VAKATVFCRP DSAFLCLSCD AEIHGANKVA SRYHREWMCV  60
VCEQGPAAVV CNPDAAALCA TCDADLHSPG TRASRHVRVP VMPYLGWEPF SSSSIGPGHE  120
RGGGPNSGDS SGSELVEGSD FMSVDELSTY VDSFLVFDRD PSPSRVRQGS DHRSEPPPLV  180
STNQSWDNLS GNEFCGSFQH TTTTAQSLSQ HNQSHIFKRK KNGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.16e-27CO-like family protein