PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98068.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 366aa MW: 40504.5 Da PI: 7.035

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8.1e-16	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++ +++ G g+W+t +++ g+ R++k+c++rw +yl PON98068.1 34 RGPWTAEEDEVLARFIRKEGEGRWRTLPKRAGLMRCGKSCRLRWMNYL 81 89********************************************97 PP
2	Myb_DNA-binding	46.5	8.5e-15	92	132	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l PON98068.1 92 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MRKQPPSSSK TSNISSATGG SKTTPCCSKV GIKRGPWTAE EDEVLARFIR KEGEGRWRTL 60 PKRAGLMRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT 120 DNEIKNYWNT HLSKKLISQG IDPRTHKPLN PVDDHHKEIT NKASPSSSSK TNPHGRLSSN 180 PSPSPNRTYQ TPLSTVPEEG EEEEEEAPST EAAATQTNKE NGYFDFGQYN QSKGKVGYNF 240 HGYENFTGYN SVGYGTGLRS SSSTATTTNY GMGNEEDHDH AHEDINYCSD DVFSSFLNSL 300 INEDAFSGPQ HQLLPANGIN PPFSTTITGH DPAFLSTNGW ESAPMSSAAL NQNENPTRVD 360 HDGVLD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MRKQPPSSSK TSNISSATGG SKTTPCCSKV GIKRGPWTAE EDEVLARFIR KEGEGRWRTL  60
PKRAGLMRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNYWNT HLSKKLISQG IDPRTHKPLN PVDDHHKEIT NKASPSSSSK TNPHGRLSSN  180
PSPSPNRTYQ TPLSTVPEEG EEEEEEAPST EAAATQTNKE NGYFDFGQYN QSKGKVGYNF  240
HGYENFTGYN SVGYGTGLRS SSSTATTTNY GMGNEEDHDH AHEDINYCSD DVFSSFLNSL  300
INEDAFSGPQ HQLLPANGIN PPFSTTITGH DPAFLSTNGW ESAPMSSAAL NQNENPTRVD  360
HDGVLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-82	MYB family protein