PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98142.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

WOX

Protein Properties

Length: 370aa MW: 41842.1 Da PI: 8.4849

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.8e-20	96	156	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++ql +Leel++ +r+p+a++++e+++ l +++ ++V++WFqN++a++k+ PON98142.1 96 SSRWTPTPKQLLVLEELYRHgKRTPTAQQIQEITAMLrrfgKIEGKNVFYWFQNHKARDKR 156 58***************99************************************97 PP
2	Wus_type_Homeobox	111.5	4.4e-36	95	158	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RWtPtp+Q+ +Leely++G rtP++++iq+ita+L+++Gkie+kNVfyWFQN+kaR+++k+ PON98142.1 95 QSSRWTPTPKQLLVLEELYRHGKRTPTAQQIQEITAMLRRFGKIEGKNVFYWFQNHKARDKRKR 158 589***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGCADGNEIN KLMPSSFKDL NLLPHHHVIT SFSAKNTTTI ITPIIPPNSN HTDSSSTTAN 60 RPSLINHHPA EQGWDNNKGY LNNIHVTRQV VVPMQSSRWT PTPKQLLVLE ELYRHGKRTP 120 TAQQIQEITA MLRRFGKIEG KNVFYWFQNH KARDKRKRRK ILEAAAARSN NQRQYHNFDA 180 KSLELTKELP ALPELSSGSR VTGLGVEQTK QEPFPNTTRI SEEFAPVPRV AIEEGSTNRL 240 VRHKERELDL GLILNNNVKI EEGHATWEPM EMSYSFPANF FLNWARPTVT SLALDGKPLE 300 KTQDCSSSVM PCGENFPSFG NRIKESDQTL ELFPLRSDNL KGSPHTEGTE VTSERGDSDF 360 KAELSLSFFL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGCADGNEIN KLMPSSFKDL NLLPHHHVIT SFSAKNTTTI ITPIIPPNSN HTDSSSTTAN  60
RPSLINHHPA EQGWDNNKGY LNNIHVTRQV VVPMQSSRWT PTPKQLLVLE ELYRHGKRTP  120
TAQQIQEITA MLRRFGKIEG KNVFYWFQNH KARDKRKRRK ILEAAAARSN NQRQYHNFDA  180
KSLELTKELP ALPELSSGSR VTGLGVEQTK QEPFPNTTRI SEEFAPVPRV AIEEGSTNRL  240
VRHKERELDL GLILNNNVKI EEGHATWEPM EMSYSFPANF FLNWARPTVT SLALDGKPLE  300
KTQDCSSSVM PCGENFPSFG NRIKESDQTL ELFPLRSDNL KGSPHTEGTE VTSERGDSDF  360
KAELSLSFFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-31	WOX family protein