PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98293.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 301aa MW: 34389.9 Da PI: 8.5634

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.5e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l ++k +G g+W ++ g++R++k+c++rw +yl PON98293.1 14 RGAWTNLEDKILTAYIKVHGEGDWYNLPKLAGLNRCGKSCRLRWVNYL 61 89********************************************97 PP
2	Myb_DNA-binding	48.1	2.7e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++ +k+lG++ W+ Ia +++ gRt++++k++w++ PON98293.1 67 RGSISQDEEDLIIKMHKLLGNR-WSIIAGRLP-GRTDNEIKNYWNTT 111 78889***************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGRRPCCSKL GLNRGAWTNL EDKILTAYIK VHGEGDWYNL PKLAGLNRCG KSCRLRWVNY 60 LRPDIKRGSI SQDEEDLIIK MHKLLGNRWS IIAGRLPGRT DNEIKNYWNT TLRKKLSEAP 120 NRNNDSINPK TKRKRSIPAL EPNNKVNNSN TKNIVKSHTV EPIKTKAFRF TSRVQKLPAL 180 FQFPTPCTDK WGQFSEKEFI LNHGSTMDKD QTSQESGDLI IDSCYCKGQQ INEDLMIKAP 240 STTTHDANSP SLDDHDQHVS ENNWIMASSN IINNDHFSNI GDELGELDFK SLECFLDLDK 300 E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	135	RKKLSEAPNRNNDSINPKTKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	8e-60	MYB family protein