PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98323.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24423.7 Da PI: 6.8021

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.6	1.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdae a+i+fsstgkly+yss PON98323.1 9 KKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEMALIVFSSTGKLYDYSS 59 68***********************************************96 PP
2	K-box	47.2	9.6e-17	88	166	19	97
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +a L ke+ + +e+R+++Ge+Le+L l eL++Le+ +e +l ++ ++K++ +l++i+ l++k +l e+n+ L+++ PON98323.1 88 ERYASLSKELAEKTTEIRQMKGEKLEDLGLDELKRLEKLVEAGLGRVIETKDDRILKEINSLKRKGVQLLEDNQHLKQM 166 567788888888889*************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MTRQKIEIKK IDNITARQVT FSKRRRGLFK KAQELSTLCD AEMALIVFSS TGKLYDYSSS 60 SMQKVIERHN FQSEHPAKSS QPSLDELERY ASLSKELAEK TTEIRQMKGE KLEDLGLDEL 120 KRLEKLVEAG LGRVIETKDD RILKEINSLK RKGVQLLEDN QHLKQMAGTR RVQTDIIDQG 180 QSSDSITGIC SSADLPEDFD SSDTTLKLGL PFPESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-68	MIKC_MADS family protein