PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98324.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24749.2 Da PI: 7.6142

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.6	5.8e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA ELS+LCdae+a+i+fs tgkly+y+s PON98324.1 9 KKIDNITARQVTFSKRRRGLFKKALELSTLCDAEIALIVFSATGKLYDYAS 59 68***********************************************86 PP
2	K-box	45.4	3.4e-16	92	171	19	98
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a L+ e+e+ e+Rh++Ge+L++Lsl+e+++Le+ +e++l+++ + K++ l++i l++k elqe+n++L++k PON98324.1 92 SRCASLRTELEEKTMELRHMKGEELQELSLEEIKKLENLIETGLSRVTELKDQRSLKEITFLKRKGIELQEDNHRLKQKT 171 567889999999999**************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MTRQKIEIKK IDNITARQVT FSKRRRGLFK KALELSTLCD AEIALIVFSA TGKLYDYASS 60 SMQQVIQRHN CHSENHHKLS QPSVDVLECE RSRCASLRTE LEEKTMELRH MKGEELQELS 120 LEEIKKLENL IETGLSRVTE LKDQRSLKEI TFLKRKGIEL QEDNHRLKQK TNVVQVQADL 180 LEKHLIDSIT DIYNTTNSLP DQDHYGSDTT LKLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	7e-55	MIKC_MADS family protein