PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON98987.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family YABBY
Protein Properties Length: 199aa    MW: 22131 Da    PI: 5.0949
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON98987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY215.61.5e-6661652168
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                 ++f+ seq+CyvqC+fC+til+vsvP +s+++vvtvrCGhCt llsvn++kas +     hl  sl ++       ++e+++s +++ ++a++++ss  
  PON98987.1   6 QIFDLSEQICYVQCGFCTTILLVSVPCSSMSMVVTVRCGHCTGLLSVNMMKASFVP---LHLLASLGQNHE-----QKEEVDSEEMEPQNAMETRSSVV 96 
                 7899********************************************99988542...233333333333.....33334444444444444444444 PP

       YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                  s+ ed ++    + v++PPekrqr+Psaynrfi+eei+r+ka+nP+++h+eafsaaaknWahfP+  +
  PON98987.1  97 SSDTEDGDSISLDQiVNKPPEKRQRAPSAYNRFIREEIKRLKAENPNMAHKEAFSAAAKNWAHFPPTQY 165
                 4444554544455559*************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSALNQIFDL SEQICYVQCG FCTTILLVSV PCSSMSMVVT VRCGHCTGLL SVNMMKASFV  60
PLHLLASLGQ NHEQKEEVDS EEMEPQNAME TRSSVVSSDT EDGDSISLDQ IVNKPPEKRQ  120
RAPSAYNRFI REEIKRLKAE NPNMAHKEAF SAAAKNWAHF PPTQYKGGED QSCNQRDENV  180
TCDSDVNKVK TRIGNLEAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.18e-61YABBY family protein