PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON99579.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 456aa MW: 50332.3 Da PI: 8.5807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON99579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	356	393	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L +l+ + +K + a++L++A+ YI+ L PON99579.1 356 RKEKLGDRIAALHRLVAPF-----GKTDTASVLTEAIGYIQFL 393 6678889999999999998.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEYRNLHSQN QLQDQVTGRS SLPTGPQSGT ARITSTRNNW NPSMNFLNHG TTLYPTDETI 60 PNSRLWPSSP VTRFTTQDLV MSSSSSSSTT TDHARGFNQR ISAHNESSWV PNIKKEPPDF 120 DFDKLRINNI SSTPYSDLDE SNYLISTMYK QNQHNIIGLS NSSTVSSGQI LADDQDFYSV 180 NAQSNNNNIN ASFGAGFTGH HVAATNGYDD DLGHVFSIRT TSSTGTSLLS SPSLMLASGG 240 FNLQALDLLM SPTSSTTYRS QSFSPSSHSS YNNHNLSLYS QSSSTSLGHG HHDMQDYSRS 300 SPSNSSNMTS AFLNEVTRST KRPSSSSFSE PKEYSRAESK KSKSMLRTSN PPLKVRKEKL 360 GDRIAALHRL VAPFGKTDTA SVLTEAIGYI QFLHDQVQTL SMPYMKSLQT KSSRKMQQVH 420 GLSKEEETDQ LNKMDLRSRG LCLVPQSCAS YLNGFD

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEYRNLHSQN QLQDQVTGRS SLPTGPQSGT ARITSTRNNW NPSMNFLNHG TTLYPTDETI  60
PNSRLWPSSP VTRFTTQDLV MSSSSSSSTT TDHARGFNQR ISAHNESSWV PNIKKEPPDF  120
DFDKLRINNI SSTPYSDLDE SNYLISTMYK QNQHNIIGLS NSSTVSSGQI LADDQDFYSV  180
NAQSNNNNIN ASFGAGFTGH HVAATNGYDD DLGHVFSIRT TSSTGTSLLS SPSLMLASGG  240
FNLQALDLLM SPTSSTTYRS QSFSPSSHSS YNNHNLSLYS QSSSTSLGHG HHDMQDYSRS  300
SPSNSSNMTS AFLNEVTRST KRPSSSSFSE PKEYSRAESK KSKSMLRTSN PPLKVRKEKL  360
GDRIAALHRL VAPFGKTDTA SVLTEAIGYI QFLHDQVQTL SMPYMKSLQT KSSRKMQQVH  420
GLSKEEETDQ LNKMDLRSRG LCLVPQSCAS YLNGFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-37	bHLH family protein