PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON99714.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 587aa    MW: 65442.4 Da    PI: 4.7993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON99714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.55.2e-1382185872374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cA ++s+g+  +a+ ++++l++++s +g+p qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN 
  PON99714.1 218 RQLLIDCAGVLSEGNIDEASIMINELRQMVSVQGEPSQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANG 313
                 689*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ e+rvHiiDfdi+qG Q+++L++++asR+++pp+lR+Tgv++pes+  s   l+ +g+ L+++A+e gvpfef++ va+r++ +++++L+++
  PON99714.1 314 AIIEAFKDEKRVHIIDFDINQGSQYMTLIRTIASRTSKPPHLRLTGVDDPESVqrSVGGLKIIGQMLEQLAAEHGVPFEFQA-VASRTSLVTPSMLDCR 411
                 ***************************************************9989999************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres++r++vEr++l+r+ivn
  PON99714.1 412 PGEALIVNFAFQLHHMPDESVSTINQRDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYNYYSAVFESLDATLPRESQDRTNVERQCLARDIVN 510
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vaceg+er+er e ++kWr+r+++aGF++ pls++++++++ l+r++ ++ y++++e g+l +gW d++L+++SaWr
  PON99714.1 511 IVACEGEERIERYEVAGKWRARMTMAGFTSCPLSSNVVNSIRELIRQYCDR-YKIKDEMGALHFGWVDKSLIVASAWR 587
                 *************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MSLVRPAEVS ATSYRNPKLY SLKGSNDSSG FSTQTFGSDK RKTLYVTDSY STESYEKYFL  60
DSPSDEIQQP SCSSVSGNSF NPQDASSYQL RAGSVSHLAT QNPCNISFMS MRDHVSHQSN  120
FESDYLESSS PDLGDFDEST MRLKLQELER ALLNDNDGED DEDMFGSGQS MEVDGEWVGP  180
AQNGLIHDSP KESSSSDSYP SSISSNKEIS QISPRTPRQL LIDCAGVLSE GNIDEASIMI  240
NELRQMVSVQ GEPSQRIAAY MVEGLAARMA ASGKFLYKAL KCKEPPSSDR LAAMQILFEV  300
CPCFKFGFMA ANGAIIEAFK DEKRVHIIDF DINQGSQYMT LIRTIASRTS KPPHLRLTGV  360
DDPESVQRSV GGLKIIGQML EQLAAEHGVP FEFQAVASRT SLVTPSMLDC RPGEALIVNF  420
AFQLHHMPDE SVSTINQRDQ LLRMVKSLNP KLVTVVEQDV NTNTSPFFPR FIEAYNYYSA  480
VFESLDATLP RESQDRTNVE RQCLARDIVN IVACEGEERI ERYEVAGKWR ARMTMAGFTS  540
CPLSSNVVNS IRELIRQYCD RYKIKDEMGA LHFGWVDKSL IVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein