PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON99716.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 366aa MW: 41551.8 Da PI: 8.9646

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON99716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5e-18	22	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ PON99716.1 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67 899***************************.*********996 PP
2	Myb_DNA-binding	60.1	4.8e-19	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ PON99716.1 74 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 117 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MEESVGPAGS SGAADDAKTC PRGHWRPAED EKLRQLVEQY GAQNWNSIAE KLQGRSGKSC 60 RLRWFNQLDP RINRRPFTEE EEERLLAAHR IHGNKWALIA RLFPGRTDNA VKNHWHVIMA 120 RKQREQSKVC GKRSYRDHHD HHLHLFSNLE SEHAASSSGN FPRKQAPLQG WDYSFSLESY 180 NTNKDNRSPT SILILDEYSP LSSWNFSNSL TTTRVNKPTV SSSEAAFVIT SRENLNKDYH 240 HHHRQRDFSS SCSNNFYSTS SASWLYGSSG VPVNYKRVVS SSFGHHHDLD QAVFNKQLRS 300 DHQKKLLANN NTSSSFCDNV LPTRKCGKIR ASAILGQEDH DHHESNNDAK EGIPFIDFLG 360 VGISSS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MEESVGPAGS SGAADDAKTC PRGHWRPAED EKLRQLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRRPFTEE EEERLLAAHR IHGNKWALIA RLFPGRTDNA VKNHWHVIMA  120
RKQREQSKVC GKRSYRDHHD HHLHLFSNLE SEHAASSSGN FPRKQAPLQG WDYSFSLESY  180
NTNKDNRSPT SILILDEYSP LSSWNFSNSL TTTRVNKPTV SSSEAAFVIT SRENLNKDYH  240
HHHRQRDFSS SCSNNFYSTS SASWLYGSSG VPVNYKRVVS SSFGHHHDLD QAVFNKQLRS  300
DHQKKLLANN NTSSSFCDNV LPTRKCGKIR ASAILGQEDH DHHESNNDAK EGIPFIDFLG  360
VGISSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	2e-62	MYB family protein