PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO00011.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Whirly
Protein Properties Length: 200aa    MW: 22285.1 Da    PI: 10.4494
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO00011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly71.61.3e-22109162154
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqs 54 
                 s+yk+kaal+v++++p+f+aldsg++k++++G++ll++a+a+++r ydW++kq 
  POO00011.1 109 SIYKGKAALTVEPRAPEFTALDSGAFKVSKEGFVLLQFAPAAGVRVYDWSRKQF 162
                 7***************************************************84 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MMMTIRPYSL SYSSSSPFPV TAQNPNMCPS HSFYSPPFPG TNGFNFNISR FSANPNSVRK  60
RLSLKCRQSD YFEQQKFSTT TAPNNDSSFA SQTPPRGGQL PARFFVGHSI YKGKAALTVE  120
PRAPEFTALD SGAFKVSKEG FVLLQFAPAA GVRVYDWSRK QFILPHLIGW SAFANSIKPE  180
DTSRGNNASP RFGGDYEWKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-41Whirly family protein