PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00664.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GRF

Protein Properties

Length: 622aa MW: 66475.4 Da PI: 8.2368

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.5	2.6e-24	242	286	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e POO00664.1 242 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 286 79****************************************985 PP
2	QLQ	56.6	7.8e-20	173	208	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll++++k POO00664.1 173 PFTPSQWIELEHQALIYKYITSNVPVPSNLLLPLKK 208 9********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MDFGLVSLES LVASSHKGGN GGGGGGGGVH SQLNDSETKP SKGLIGSGFV KQERSEPGED 60 DWKSSKVAKT VDLSASKTMP LHHGSTPLLR SNSSLFHGEP TRQQEHMLSF SSNKSEVSFL 120 SKDGSTGIIE RASQNSAFPY YQRAPPSYSR NAGYGSGSLN AGMHVPFTGI RAPFTPSQWI 180 ELEHQALIYK YITSNVPVPS NLLLPLKKSL NPYVLTGSSA VSLPSNSLGW GSFHLGFADN 240 TDPEPGRCRR TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQTGH AASGTTNSKV 300 AQMTTSVSTS AMPGGGGGGA SSSLAITQHQ FKGLQSGAAT NPSADTLVNR MQDLRGGLSV 360 ISSSNVNPKS NESTFNVLKQ EIPPGETSQS EFGLVSTDSL LNPSQENSYI NSKNYASFLD 420 FSGQDTQDQH HPLRHFIDDW PKDQSNRSII TWPEEMKSDW TQLSMSIPVT SSEFSSSTNS 480 PTRQEKIALS PLRLSRENEP MQMNLGVNND LSEATQKQTN WVPKSWGSSL GGPLGEVLTN 540 TAGNVKACKN PSSLNLLTEG WDGSPQLGSS PTGVLQKSTF CSLSNSSSGS SPRADNKKNI 600 DGASVFDDVL GSTLASSSVP SL

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MDFGLVSLES LVASSHKGGN GGGGGGGGVH SQLNDSETKP SKGLIGSGFV KQERSEPGED  60
DWKSSKVAKT VDLSASKTMP LHHGSTPLLR SNSSLFHGEP TRQQEHMLSF SSNKSEVSFL  120
SKDGSTGIIE RASQNSAFPY YQRAPPSYSR NAGYGSGSLN AGMHVPFTGI RAPFTPSQWI  180
ELEHQALIYK YITSNVPVPS NLLLPLKKSL NPYVLTGSSA VSLPSNSLGW GSFHLGFADN  240
TDPEPGRCRR TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQTGH AASGTTNSKV  300
AQMTTSVSTS AMPGGGGGGA SSSLAITQHQ FKGLQSGAAT NPSADTLVNR MQDLRGGLSV  360
ISSSNVNPKS NESTFNVLKQ EIPPGETSQS EFGLVSTDSL LNPSQENSYI NSKNYASFLD  420
FSGQDTQDQH HPLRHFIDDW PKDQSNRSII TWPEEMKSDW TQLSMSIPVT SSEFSSSTNS  480
PTRQEKIALS PLRLSRENEP MQMNLGVNND LSEATQKQTN WVPKSWGSSL GGPLGEVLTN  540
TAGNVKACKN PSSLNLLTEG WDGSPQLGSS PTGVLQKSTF CSLSNSSSGS SPRADNKKNI  600
DGASVFDDVL GSTLASSSVP SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-111	GRF family protein