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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | POO00708.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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| Family | GRAS | ||||||||
| Protein Properties | Length: 508aa MW: 56781.2 Da PI: 5.2427 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 351.2 | 1.6e-107 | 126 | 507 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
e Lle A+av++++ +++q+l++ l+el+sp+gd+ q+laayf++AL +r+++s++++ ++l + ++++ + +++ +++ f+evsP+ +f+h+++N a
POO00708.1 126 EILLETARAVADKNSSRVQQLMWMLNELSSPYGDSDQKLAAYFLQALFSRVNDSGDRCHRTLVSASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGA 224
579**********************************************************97777775554444455556****************** PP
GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
I+ea+ege ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v s + ++ ++e+g r++kfA+ +gvpf+f+v+++ +l++l+l
POO00708.1 225 IMEALEGEPKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVISTRDAassgpggsVQKVMKEIGTRMEKFARLMGVPFKFHVVHHYgDLSELNL 323
*********************************************9997666889999999999***********************97667******* PP
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvE 286
eL+v+ +EalaVn+v +lh++ ++ s+rd v +++sl+P+vv+vve+ead++ + +F+ +f e+++++ + f++l++++pr+s+er ++E
POO00708.1 324 AELDVRDDEALAVNCVNSLHSVA----AVGSRRDYVAAAFRSLRPRVVTVVEEEADLDVGpdgvEFVSGFQECVRWFRVYFEALDESFPRTSNERLMLE 418
**********************8....8888999********************99865545669********************************** PP
GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgslv.lgWkdrpLvsvSaWr 374
r+ gr++v++vac+ ++++er+et+++W++rl+ aGF+pv++s+++ +++++llr++k dg+ + ++ g+ + l+Wkd+p+v++SaWr
POO00708.1 419 RA-AGRAVVDLVACSPSDSVERRETAARWSRRLHGAGFSPVAFSDEVSDDVRALLRRYK-DGWAMTqcSDAGAGIfLTWKDEPVVWASAWR 507
**.********************************************************.6655443355555545**************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 508 aa Download sequence |
MDTLFRLVSL QSDQQSFNST SRTSSSSRSS RQYQQNHQDQ EEECFNFFMD EEDFSSSSSK 60 HYYPYNHPHP STTSTPTPTP TPTPPHNPNT TTTNASTSTT DFPFSPAGDL INNLDLFSSG 120 NKWAPEILLE TARAVADKNS SRVQQLMWML NELSSPYGDS DQKLAAYFLQ ALFSRVNDSG 180 DRCHRTLVSA SEKTCSFEST RKMVLKFQEV SPWTTFGHVA CNGAIMEALE GEPKLHIIDI 240 SNTYCTQWPT LLEALATRTD ETPHLRLTTV ISTRDAASSG PGGSVQKVMK EIGTRMEKFA 300 RLMGVPFKFH VVHHYGDLSE LNLAELDVRD DEALAVNCVN SLHSVAAVGS RRDYVAAAFR 360 SLRPRVVTVV EEEADLDVGP DGVEFVSGFQ ECVRWFRVYF EALDESFPRT SNERLMLERA 420 AGRAVVDLVA CSPSDSVERR ETAARWSRRL HGAGFSPVAF SDEVSDDVRA LLRRYKDGWA 480 MTQCSDAGAG IFLTWKDEPV VWASAWRP |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G37650.1 | 0.0 | GRAS family protein | ||||




