PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00896.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 413aa MW: 44790.7 Da PI: 7.3223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00056	273	311	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq POO00896.1 273 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 311 6678889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MNRAGVLQSS PVQQMMAAGN PNWWNINAMR PPTQPVLPSP SFLYPQFIPT TTTTTTATTT 60 TTTTTTSNSS SSSSANSSHH ELPNIPSWAH DNNQDQLPES WSQLLLGGLA VGEEEKANNM 120 MSHFQVKKLE NWEDHHPHHH QQMLSSTTQA SNASVHMVDH VKQENSAAYV YGHGSQEFQA 180 KPGGGGCGAW LSHQHQIMMA NNSNSSPKSS CVTSFSSNML DFSNISKDDH HTTTHPPLLS 240 DRSSECNSTA TGGAPLKKAR VQPSSAQNTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL 300 LEAIGYIRFL QSQIEALSLP YLGSGSGNMR QQQSVHGERN CMFPEDPGQL LNDNCMKRKG 360 APDQQDSLEK PKKDLRSRGL CLVPVSCTLQ VGSDNGADYW APALGGGTGG GFR

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MNRAGVLQSS PVQQMMAAGN PNWWNINAMR PPTQPVLPSP SFLYPQFIPT TTTTTTATTT  60
TTTTTTSNSS SSSSANSSHH ELPNIPSWAH DNNQDQLPES WSQLLLGGLA VGEEEKANNM  120
MSHFQVKKLE NWEDHHPHHH QQMLSSTTQA SNASVHMVDH VKQENSAAYV YGHGSQEFQA  180
KPGGGGCGAW LSHQHQIMMA NNSNSSPKSS CVTSFSSNML DFSNISKDDH HTTTHPPLLS  240
DRSSECNSTA TGGAPLKKAR VQPSSAQNTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL  300
LEAIGYIRFL QSQIEALSLP YLGSGSGNMR QQQSVHGERN CMFPEDPGQL LNDNCMKRKG  360
APDQQDSLEK PKKDLRSRGL CLVPVSCTLQ VGSDNGADYW APALGGGTGG GFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-96	bHLH family protein