PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00914.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 976aa MW: 108311 Da PI: 5.1119

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	38	83	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+eEdell +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l POO00914.1 38 GKWTAEEDELLRRAVEHYKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 89**************************9.**********986 PP
2	Myb_DNA-binding	57.5	3.2e-18	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+++G + W+ Ia+ ++ gR +kqc++rw+++l POO00914.1 89 KGPWSKEEDEVIVELVNKYGAKKWSMIAEALP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.9	1.5e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ POO00914.1 141 KEPWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence
MTRLRRTSVK SDGVSNALQK LKPLRGRTSG PTRRSTTGKW TAEEDELLRR AVEHYKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELIKG PWSKEEDEVI VELVNKYGAK KWSMIAEALP 120 GRIGKQCRER WHNHLNPAIN KEPWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL ETYLASGLLD QLETYLPQVG NLNSASSLGI QPNNVSGVEE EDSSECSQGS 240 NGVNCAQFEP ITENAASNAG ENFKTEESSC SMGHDLEQFG IYGNATPGIN NSHFGSHDLA 300 MSCLGAPEES SLQLGTSGLN ITSNENRTGS TLLQSTVGFS TDTVENLLVD SVKLERLLIS 360 ENDCSEFTFS ELRGPGCFPQ ENAEKRSNSL GLDGVGSSSL CHCDIESSLT ARTSPLESFV 420 HGKDISQQTL ELEVNPSLRD NFICVDSPTG EADKTDSYPK LDEAKNAPKL VAVDIFSKRN 480 SDSTGTFVSV HENKTHSKAD SLQTIPSIDD DATMQKEEQD LQTLSYEPPR FPRLDIPFFN 540 CDLMESAGDL QHNYSPFGIR QLMIPSASLS SPHCLLVDSP TRDSTPRAVL KHASKSFNSS 600 TTMMKRRLHE ILSPVKERRG ETKLDRESNI RSSSFSCAFS SLESLFDDNG ACRMSISSID 660 DSLLDVTGVD YAFEEGTKRV NKLDSKISEK DESTSNSSDK LEQESIKVDT ELKIDNTDTN 720 FKEQSARVLI EHNLDSQLIV SPRFGHQTNR RLAAAVLTPR SRYSRRLDRS DQGGSLVSVI 780 GKDERCKVPV MSVEFATPSK PLEETTSRAA GNDADIQGTY MIGETPGTQR DLESPSAWKL 840 LHSFLHGPGV DTDIPLQELE YFLSPGMRSY EAFGLMRQMN PGEVLASDPD YPEMSSKTLI 900 SSDDQNLFFK DDYFLHDEKE NFPPPSVLLM DRRVLDFGGC GTETPVKEME NKKFAGSSSS 960 EGTSGPSSSH LMKSCR

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence

MTRLRRTSVK SDGVSNALQK LKPLRGRTSG PTRRSTTGKW TAEEDELLRR AVEHYKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELIKG PWSKEEDEVI VELVNKYGAK KWSMIAEALP  120
GRIGKQCRER WHNHLNPAIN KEPWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL ETYLASGLLD QLETYLPQVG NLNSASSLGI QPNNVSGVEE EDSSECSQGS  240
NGVNCAQFEP ITENAASNAG ENFKTEESSC SMGHDLEQFG IYGNATPGIN NSHFGSHDLA  300
MSCLGAPEES SLQLGTSGLN ITSNENRTGS TLLQSTVGFS TDTVENLLVD SVKLERLLIS  360
ENDCSEFTFS ELRGPGCFPQ ENAEKRSNSL GLDGVGSSSL CHCDIESSLT ARTSPLESFV  420
HGKDISQQTL ELEVNPSLRD NFICVDSPTG EADKTDSYPK LDEAKNAPKL VAVDIFSKRN  480
SDSTGTFVSV HENKTHSKAD SLQTIPSIDD DATMQKEEQD LQTLSYEPPR FPRLDIPFFN  540
CDLMESAGDL QHNYSPFGIR QLMIPSASLS SPHCLLVDSP TRDSTPRAVL KHASKSFNSS  600
TTMMKRRLHE ILSPVKERRG ETKLDRESNI RSSSFSCAFS SLESLFDDNG ACRMSISSID  660
DSLLDVTGVD YAFEEGTKRV NKLDSKISEK DESTSNSSDK LEQESIKVDT ELKIDNTDTN  720
FKEQSARVLI EHNLDSQLIV SPRFGHQTNR RLAAAVLTPR SRYSRRLDRS DQGGSLVSVI  780
GKDERCKVPV MSVEFATPSK PLEETTSRAA GNDADIQGTY MIGETPGTQR DLESPSAWKL  840
LHSFLHGPGV DTDIPLQELE YFLSPGMRSY EAFGLMRQMN PGEVLASDPD YPEMSSKTLI  900
SSDDQNLFFK DDYFLHDEKE NFPPPSVLLM DRRVLDFGGC GTETPVKEME NKKFAGSSSS  960
EGTSGPSSSH LMKSCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	2e-95	MYB family protein