PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01232.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 714aa MW: 77161 Da PI: 6.6543

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.6	5.5e-24	125	226	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+++ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +++++ POO01232.1 125 FAKTLTQSDANNGGGFSVPRHCAETIfppldyeADPPVQ--TVVARDVHGQEWKFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSIVFL--KTDNGDI 219 89**************************995444444..9********************************************..5578888 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ POO01232.1 220 FVGIRRA 226 9*996 PP
2	Auxin_resp	104.9	9.2e-35	291	374	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+ +++FevvY+P ast+ F+vk++ v++a++++++ G+Rfkmafetedss+ ++ +Gtv++v+ +d+++WpnS+Wr+L+ POO01232.1 291 AVTLAARGQPFEVVYYPTASTTAFCVKASAVKAAMRIQWCSGTRFKMAFETEDSSRVSWfMGTVASVQVADQIHWPNSPWRLLE 374 678899***************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MRERAGGERN RLDYRLWQAC AGRLVQVPPV NSAAFYFPQG HAEHSHANSV DFSAAVAGIG 60 VPAVIPCRVA AVDFMASSET DEVFAKIRLV PVMRNEEVDL DDDGGAAIGG GGGGLEGNPE 120 KPTFFAKTLT QSDANNGGGF SVPRHCAETI FPPLDYEADP PVQTVVARDV HGQEWKFRHI 180 YRGTPRRHLL TTGWSTFVNN KKLVAGDSIV FLKTDNGDIF VGIRRAKRGG GGGGGGHDSG 240 SGWNYGNCVS SFGGFSHEEK KLVRNGYGGG GGGGGNMRGM GKIRPEAVIE AVTLAARGQP 300 FEVVYYPTAS TTAFCVKASA VKAAMRIQWC SGTRFKMAFE TEDSSRVSWF MGTVASVQVA 360 DQIHWPNSPW RLLEVTWDEP DLLQNVKRVN PWLVELANMP VIQFSSFSPP RKKFRLHQQP 420 DFTLEGGQFP VSSLLGNTLG PSSPLCYPPD NTPAGIQGAR HVLFGVSISD LPLNSKLQSG 480 TFPSNVQQLN QHSVIIPNGV MAGQTHSSES LSCLLTTESS GQNLEKSETP KKQQFVLFGQ 540 HIVVEQKSCS SPPAASPPSD AVSQVLSGKD TGDGNTDTEK SPPNDSGPTL QASGYDLNID 600 HCNVFLDSED LGVTLDLSDL RSYEELYGLL AKMFGIERSQ MLNSVLYHDA TGVPKRIEDE 660 PFSDFMKTAK RLTIVTDSGS KNTRSMILPL TGPRSQGCRM LTMDLLLPIR PVVV

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MRERAGGERN RLDYRLWQAC AGRLVQVPPV NSAAFYFPQG HAEHSHANSV DFSAAVAGIG  60
VPAVIPCRVA AVDFMASSET DEVFAKIRLV PVMRNEEVDL DDDGGAAIGG GGGGLEGNPE  120
KPTFFAKTLT QSDANNGGGF SVPRHCAETI FPPLDYEADP PVQTVVARDV HGQEWKFRHI  180
YRGTPRRHLL TTGWSTFVNN KKLVAGDSIV FLKTDNGDIF VGIRRAKRGG GGGGGGHDSG  240
SGWNYGNCVS SFGGFSHEEK KLVRNGYGGG GGGGGNMRGM GKIRPEAVIE AVTLAARGQP  300
FEVVYYPTAS TTAFCVKASA VKAAMRIQWC SGTRFKMAFE TEDSSRVSWF MGTVASVQVA  360
DQIHWPNSPW RLLEVTWDEP DLLQNVKRVN PWLVELANMP VIQFSSFSPP RKKFRLHQQP  420
DFTLEGGQFP VSSLLGNTLG PSSPLCYPPD NTPAGIQGAR HVLFGVSISD LPLNSKLQSG  480
TFPSNVQQLN QHSVIIPNGV MAGQTHSSES LSCLLTTESS GQNLEKSETP KKQQFVLFGQ  540
HIVVEQKSCS SPPAASPPSD AVSQVLSGKD TGDGNTDTEK SPPNDSGPTL QASGYDLNID  600
HCNVFLDSED LGVTLDLSDL RSYEELYGLL AKMFGIERSQ MLNSVLYHDA TGVPKRIEDE  660
PFSDFMKTAK RLTIVTDSGS KNTRSMILPL TGPRSQGCRM LTMDLLLPIR PVVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein