PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01320.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

RAV

Protein Properties

Length: 387aa MW: 45107 Da PI: 7.1676

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.8	7.1e-10	74	121	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV + +g W A+I+ + +r++lg+f +++ Aa a++ a+ +l++ POO01320.1 74 RFKGVVQQQ-NGHWGAQIYA------NhQRIWLGTFKSEKAAAMAYDSAAIRLRN 121 68*9888.8**999......44******99***********97 PP
2	B3	91.7	5.5e-29	211	317	1	95
EEEE-..-HHHHTT-EE--HHH.HTT................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ltpsdv+k++rlv+pkk+a ++ e e+++l+++d+ rsW+++++y+++s+++v+t+GW++Fvk+n+Lk++D++ POO01320.1 211 FQKELTPSDVGKLNRLVIPKKYAVKYfpyidelennnnsnkeT---EngvEDIELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVI 306 99***************************999888655441...1556899****************************************** PP EEEE-SSSEE..EEE CS B3 81 vFkldgrsefelvvk 95 +F+ + +++v+ POO01320.1 307 TFYT----CHKCNVH 317 *3....3344454 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MEDDSSSMVS SAKTNIVIAA TAETSCSINT NYAAHNARSY HHKRPRHDRD HDHDRVDTNC 60 DNTNVMNIAS SSARFKGVVQ QQNGHWGAQI YANHQRIWLG TFKSEKAAAM AYDSAAIRLR 120 NGDTHRNFPW TNFTHHEPEF QNHYTAEAIL NMIKDGSYQS KFEEFLRTRS ENREICEINS 180 TIIHHHHHDN HHLNQQIRVH GDAQFLCRQL FQKELTPSDV GKLNRLVIPK KYAVKYFPYI 240 DELENNNNSN KETENGVEDI ELVFYDKLMR SWKFRYCYWR SSQSFVFTRG WNRFVKENNL 300 KANDVITFYT CHKCNVHGMR EENGQIFCLI DVTHNGVSES QMVKVEYLDD HGDKFDQGNT 360 HECKYKEAET SNTVEGKGFR LFGVDIK

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MEDDSSSMVS SAKTNIVIAA TAETSCSINT NYAAHNARSY HHKRPRHDRD HDHDRVDTNC  60
DNTNVMNIAS SSARFKGVVQ QQNGHWGAQI YANHQRIWLG TFKSEKAAAM AYDSAAIRLR  120
NGDTHRNFPW TNFTHHEPEF QNHYTAEAIL NMIKDGSYQS KFEEFLRTRS ENREICEINS  180
TIIHHHHHDN HHLNQQIRVH GDAQFLCRQL FQKELTPSDV GKLNRLVIPK KYAVKYFPYI  240
DELENNNNSN KETENGVEDI ELVFYDKLMR SWKFRYCYWR SSQSFVFTRG WNRFVKENNL  300
KANDVITFYT CHKCNVHGMR EENGQIFCLI DVTHNGVSES QMVKVEYLDD HGDKFDQGNT  360
HECKYKEAET SNTVEGKGFR LFGVDIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-110	RAV family protein