PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01394.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family YABBY
Protein Properties Length: 139aa    MW: 15511.1 Da    PI: 10.2777
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY140.22.3e-432710888170
       YABBY  88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++ s+s+ ++++   e+ d+e pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  POO01394.1  27 ESGSSSKRNNKNAAFESVDHEQPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 108
                 3333344444444467889999*9999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MGATLQTVAP QDPQKQIPVS SEDSGNESGS SSKRNNKNAA FESVDHEQPR SPPIRPPEKR  60
QRVPSAYNRF IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKV DGTNNKQAKL  120
DKTIAGDHHQ GTQKTNGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-51YABBY family protein