PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01421.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20121.7 Da    PI: 8.7892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.1e-115421350
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                f +R++++ KKA EL  LC+ ev+++ + ++g+l  ++
  POO01421.1  5 FERRKATLKKKAGELGRLCNSEVCIVCYDPNGRLDVWP 42
                779*******************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MDKIFERRKA TLKKKAGELG RLCNSEVCIV CYDPNGRLDV WPDDSARAQS IISKYYYSRS  60
ETSSNHHNSN TTSNKRKREK LINLSDMLEK KMRKLEDDLD HQVISRNLEG QNHHEIKNRY  120
PLPLGTSLWD EELDALSQDS LRGFSDYLES KIQGLNDKIA PFPNVLKNIR LRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481NKRKREKL
27594KRKREKLINLSDMLEKKMRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-10M-type_MADS family protein