PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01525.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19602 Da    PI: 4.4488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.4e-211055247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                +i+ k nr v fskRrng++KKA+ELS L++a+vav+++s++g+ y
  POO01525.1 10 KISKKENRLVCFSKRRNGLFKKAHELSALTGAQVAVLVLSESGRPY 55
                799***************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MVKRRINIEK ISKKENRLVC FSKRRNGLFK KAHELSALTG AQVAVLVLSE SGRPYFHSSS  60
PSFVAQFLTP DFSLPAGTSS SSPASAESSS GGGESEDWLR YLLDFEVEEV DVNVEELVAV  120
KEKLEEMRER AAMALDWNFA NSLLLSGDFD HDSLPPNDNV DDSSVLPSWI DLFEGCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-16MIKC_MADS family protein