PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01700.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 405aa    MW: 46038.7 Da    PI: 9.8625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-07309356448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
       POO01700.1 309 WTISEVNKLVDGISEYGVGRWTDIKRLLFtssAYRTPIDLRDKWRNLL 356
                      ********************************99************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
METRFFHLFK SGLDSNTAQD GEDELELGVL DGLLDEVEEI EDLHAADGLA SPSEDFLLDI  60
GFAGKACGLG YGPRGGSLPR NVSCESQSPG LSGSSNSAVG ISESSSVTIQ ENDSLNKPAT  120
YELPVFRHRR RRKIPVQSLD LQNHNMLDDD DDDDPLLSSM LLNRNGKNSG EASKIGASRR  180
EKRLRKPTQR YIEEFSDKKS KYFKGQERFS AVGPAGMKDK RLKVRSLDEQ HSMRPGMLSS  240
VPEELSCETK TQVVSEFRAH RGRPKKQAST SVPKPKEEVF TSDSDDDDDH RVKRKRSDKH  300
DRRKHQRMWT ISEVNKLVDG ISEYGVGRWT DIKRLLFTSS AYRTPIDLRD KWRNLLRASS  360
LQKLKKREAE EKQSHALRPL PKSLIRRVRE LAKVHPYPRE RSQKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-21MYB_related family protein