PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01780.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 257aa MW: 30317.1 Da PI: 4.6058

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.8e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+lv +vk+ G ++W++ a+ g++R++k+c++rw++yl POO01780.1 16 KGMWLEEEDERLVSYVKLKGEKRWDALAKASGLRRSGKSCRLRWLNYL 63 688*******************************************97 PP
2	Myb_DNA-binding	48.9	1.5e-15	72	114	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + eE+ +++++ +++G++ W++Iar+++ gRt++++k++w+++l POO01780.1 72 ISVEEENIILQLQERWGNK-WSKIARRLP-GRTDNEIKNYWRTHL 114 588**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MEYQAEAMQG EDQLRKGMWL EEEDERLVSY VKLKGEKRWD ALAKASGLRR SGKSCRLRWL 60 NYLRPNLKHG QISVEEENII LQLQERWGNK WSKIARRLPG RTDNEIKNYW RTHLRKKLTR 120 VQEGNSRYEL EKAKEDISFE NKIDESVSTS DDNKWNRETD QYGSADQDLW GSSSWDNSSD 180 ASGVSADFAL TSSPYENRLI SDWISEFSNE QTRETNYYDE CNSAVVQSES SYLEYWTPDD 240 HEQCDTWNSS VFLWDMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-57	MYB family protein