PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01858.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26655 Da PI: 7.5445

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	69	121	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k POO01858.1 69 KKRLTADQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 121 5679************************************************9 PP
2	HD-ZIP_I/II	117.3	8.5e-38	68	158	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+++L++ev +L+ l+ POO01858.1 68 KKKRLTADQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEFDVMSKEKQKLQEEVMKLKGMLR 158 9*************************************************************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MDWNSNLRHY VSRPECSYGF LYNYNYDQYQ GMEMKHQGLM SEGAQGQMVA SMEKDQSGIS 60 YGCGQVDKKK RLTADQLESL ERSFQEEIKL DPDRKMKLSR DLGLQPRQIA VWFQNRRARW 120 KAKQLERLYD ALKQEFDVMS KEKQKLQEEV MKLKGMLRDQ GAWKQVSTGG YTEISGEETV 180 ESTSGAIRSS SKSLGANQHH QTMAECSTHI LNVEEYNPVS PPYWGSLPSY P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	97	KKKRLTADQLESLERSFQEEIKLDPDRKMK
2	116	124	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-57	HD-ZIP family protein