PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02040.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 340aa    MW: 38510.8 Da    PI: 6.0877
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r +WT+ Ed++l +++k +G g W++ +++ g++R +k+c++rw++yl
       POO02040.1 14 RVAWTAMEDKILTEYIKIHGEGKWRSLPERAGLKRFGKSCRLRWLNYL 61
                     679*****************************99************97 PP
2Myb_DNA-binding49.31.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++++lG++ W+ Ia +++ gRt++++k++w++
       POO02040.1  67 RGNITPDEEDLIIRLHNLLGNR-WSFIAGRLP-GRTDNEIKNYWNT 110
                      7999******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGRSTPCSKE GLNRVAWTAM EDKILTEYIK IHGEGKWRSL PERAGLKRFG KSCRLRWLNY  60
LKPGIKRGNI TPDEEDLIIR LHNLLGNRWS FIAGRLPGRT DNEIKNYWNT NIVKKIQANS  120
LKSNHMTSRK PSSNQSSALV PQQPSYKIHN TTTSPVVRTK ATRCTKVVLL HQEPQNKVVL  180
LGHDNEMNGG GSTSIDDHNH DHGHDDHQYF NTSEPPVDEV PSVVDYDYDQ LVNINCDQSF  240
SYVPDKSNFP SRFMNIDFGT DDQDDFLSQF LNIDSGFNDD LTEKIISSSN SKGNSCSKSD  300
KENETFLFSH DMPFGLDLES ATASLIDQAD DDMDWLKGLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-63MYB family protein