PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02252.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

NF-YC

Protein Properties

Length: 254aa MW: 28163.8 Da PI: 6.6324

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177	1.8e-55	81	184	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv POO02252.1 81 QLRTFWASQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 179 89***99889*********************************************************************************** PP NF-YC 97 prdel 101 pr++l POO02252.1 180 PREDL 184 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MDQQGHGQRA AMAAVGSGAQ VPYGVNPYQS NKMMGPSSAG SVGLLQSPTQ PAGPSASPQL 60 AQHQLAYQHI HQQQQEQLQQ QLRTFWASQY QEIEQTSDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 REDLKDEVLA SVPRGSLPVA GPADGVPYYY ASPVGPPGMI VGKPVMDQAV YGQQTRSYMN 240 QPTWPHQQQP PNDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	8e-86	NF-YC family protein