PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02424.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 191aa MW: 21446.6 Da PI: 9.07

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H POO02424.1 48 FECKTCNRRFSSFQALGGHRASH 70 89**********99999998887 PP
2	zf-C2H2	13.8	0.00017	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +Fs L H+r+H POO02424.1 104 HECTICGVVFSMGQALGGHMRRH 126 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MKRMREDHDD GNSNININNM AKCLMLLSHQ PKPVYYKPMK PSSAADVFEC KTCNRRFSSF 60 QALGGHRASH KKPKVVVAND QDHDHDHDDE EPCNKKIMPV NKRHECTICG VVFSMGQALG 120 GHMRRHRAAA DDVGFSSLLP PVPVNPVLQL KRSNSIKAGG SWLDLNLTPL ENDLKLLFGK 180 MAPRVDSNFI Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	5e-41	C2H2 family protein