PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02485.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 372aa    MW: 41139.8 Da    PI: 8.7303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-144084147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++  + Wk+I   +g  +t  q++s+ qky
       POO02485.1 40 RESWTEEEHDKFLEALKLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 84
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MASNSNNSIN NNPQSTTPSG SDGSASAKKV RKPYTITKSR ESWTEEEHDK FLEALKLFDR  60
DWKKIEDFVG SKTVIQIRSH AQKYFQKVQK NGTLAHVPPP RPKRKAAHPY PQKASKNVLV  120
PLQASMAYPS SRNAMLPGFS PWDEASLLIS PTSNKITTSQ EEFPNLQATE GMHFFFLSFF  180
CVSCFIVSVL LVVVVVLSFV KGEFPALIMA YNVTDSADIT SRGVARNSNN SVSGIASSSR  240
SIPSSEIPKH GKQGSVLHGI PDFAEVYGFI GSVFDPETKG HVQKLKEMDP INFETDWRPD  300
FPKYTSMHGA PLQILDITGV EVLLLMRNLT FNLCNPDFEP IREVMSSYDV NAKTAGIATG  360
TLANKQTYDL PV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-95MYB_related family protein