PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02524.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GATA
Protein Properties Length: 281aa    MW: 31352.2 Da    PI: 7.9384
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-20153187135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  POO02524.1 153 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 187
                 ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MMHRCSSSQG NMAGPCSCGL FHSQSNSFSM LFSMPNHKPF DHYNHDQSHH DMYSYTSPSS  60
VDCTLSLGTP STRLSTTTNE DYHDEYSSKN SQRSMRHERR NDSCVSNFCW DLLQSNTNST  120
KQQTTSHKNA GRSGGNSTTT NNNSNDSLLA RRCANCDTTS TPLWRNGPRG PKSLCNACGI  180
RFKKEERRAA ATSTANGAAS GVVIESSHVF GHHNNPWSNI HHQQYSQAQK MPCFSPAIGN  240
EFRFMDDENH EPAVADSTGI SFLSWRLNVT DRPSLVHDFT R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-53GATA family protein