PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02541.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 618aa    MW: 68086.6 Da    PI: 5.1021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.11e-1082516182374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++L++cA+ v+s+  e+a + L rl+e +s++gdp++R++++f+eAL +r++       ++ ++s+  e  s++ + ++k++++++P+ kf+hltaNq
  POO02541.1 251 LKALIDCARLVESE-SERAVKSLIRLKESVSEQGDPTERVTFHFAEALYNRVSL------EKSSSSAMFEAASEDFTLSYKALNDACPYSKFAHLTANQ 342
                 689********995.567778899****************************98......22223333333478999********************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aIlea+e++ ++Hi+Df+i qG+QW+aLlqaLa+Rp g+p ++Ri g+ + + g   + +l +tg+rL++fA+ l+++fef++ + + +++l+  ++rv
  POO02541.1 343 AILEATERACKIHIVDFGIVQGVQWAALLQALATRPTGKPtKIRISGIPALALGksPAASLFATGNRLSEFAKLLELNFEFEP-ILTPISELNETSFRV 440
                 ************************************66666*********9888889999***********************.799************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E+laVn++lql++lldes    +   + L+l ksl++k+v++ e ea++n+  F++rf +al+yy+a+f+sle +l+r+s er  vEr+l+gr+i 
  POO02541.1 441 EEDEVLAVNFMLQLYNLLDESPMAVQ---TALRLAKSLNAKIVTLGEYEASLNRVGFMNRFKNALRYYTAVFESLEPNLSRDSPERLQVERVLFGRRIG 536
                 ******************99998888...9********************************************************************* PP

        GRAS 296 nvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  v+  e+   +rer+e  e+W+  +e++ F+pv+ls++a++qak ll +++    +++ e+s  ++ l W++ pL++vS+Wr
  POO02541.1 537 CVIGPEEPGtKRERMEDREQWKILMEDSNFEPVALSHYAVSQAKILLWNYNyRSLFSLAESSPGFLsLAWNEVPLLTVSSWR 618
                 ****9988669****************************************8888*****9999888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QSHHHHHQQQ QLTGLTPFSL SPWTTTHNSS  60
ISNTPNLGFG LTGPGFPDPF QVAGGSDTGE PGFQFPHMEH HHSTTGFRFS DFGAGPGGEF  120
DSDEWMDSIM GGGDSTDSSN LPSGCDAWQS NVDFVIYGSD PFSAAAACPS RLSVPCSSPS  180
DLNRVLFTES QKSPNHLQSQ VSPWIPPQAP PSSPPMVSKD SKSANPPLLL KNDVVGVSTS  240
SPEIESAPPL LKALIDCARL VESESERAVK SLIRLKESVS EQGDPTERVT FHFAEALYNR  300
VSLEKSSSSA MFEAASEDFT LSYKALNDAC PYSKFAHLTA NQAILEATER ACKIHIVDFG  360
IVQGVQWAAL LQALATRPTG KPTKIRISGI PALALGKSPA ASLFATGNRL SEFAKLLELN  420
FEFEPILTPI SELNETSFRV EEDEVLAVNF MLQLYNLLDE SPMAVQTALR LAKSLNAKIV  480
TLGEYEASLN RVGFMNRFKN ALRYYTAVFE SLEPNLSRDS PERLQVERVL FGRRIGCVIG  540
PEEPGTKRER MEDREQWKIL MEDSNFEPVA LSHYAVSQAK ILLWNYNYRS LFSLAESSPG  600
FLSLAWNEVP LLTVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein