PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02673.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family B3
Protein Properties Length: 444aa    MW: 50093.3 Da    PI: 8.3731
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-127891597
                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 l lp +f+ ++   ++++  ++l  ++grsW  +l++   + +s+r   l  GW eF ++n+L+ gD++vFkl ++ e ++ v+++
  POO02673.1  7 KLQLPLHFILSYV--TTQG-YVVLSVPNGRSWYAELRItppS-SSNRvARLCHGWPEFSNDNNLEFGDVCVFKLLDKPEISFEVSIV 89
                5789999998885..3344.799999**********996633.333358899*********************98777666677665 PP
2B350.73.3e-16161258196
                 EEEE-...-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltp.sdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+kvl++  +v+ ++ +  lp +f+ ++   k+++  ++l  ++grsW+ kl++   ++  ++  l kGW+eF+++n+Lk+gD+++Fkl +r e ++ v
  POO02673.1 161 FCKVLMQrTYVGFNCKIvQLPIQFVMRYI--KTQG-HVILSVPNGRSWNAKLRItppDGPNCEARLCKGWREFANDNNLKAGDVCIFKLLDRPEISFEV 256
                 5666654156777765537******9994..3343.6***************9989988888899***********************99887766666 PP

                 EE CS
          B3  95 kv 96 
                 ++
  POO02673.1 257 SI 258
                 66 PP
3B354.52.2e-17331430198
                 EEEE-..-HH..HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdv..lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 ffkvl+++ +  +k ++l lp +f+ ++ +  ++   ++l  ++grsW+ +l++    + +++  l kGW+eF+++n+Lk+gD+++Fkl +r e ++ v
  POO02673.1 331 FFKVLMQPTNagFKCKQLQLPIQFVLRYVKT-QC--HVILSVPNGRSWNAELRItppAGPKCEARLYKGWREFANDNNLKVGDVCIFKLLDRPEISFEV 426
                 78888766542256699********999533.34..6***************9989978888899***********************99998888899 PP

                 EEE- CS
          B3  95 kvfr 98 
                 +++r
  POO02673.1 427 SIVR 430
                 8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
FNCDREKLQL PLHFILSYVT TQGYVVLSVP NGRSWYAELR ITPPSSSNRV ARLCHGWPEF  60
SNDNNLEFGD VCVFKLLDKP EISFEVSIVR FAEWSRGQYA TRLSGGTIND ETGEPSSLDG  120
FPAKEASGCM SIPSKTSQRP WTATEKARIL DSIPFESEGP FCKVLMQRTY VGFNCKIVQL  180
PIQFVMRYIK TQGHVILSVP NGRSWNAKLR ITPPDGPNCE ARLCKGWREF ANDNNLKAGD  240
VCIFKLLDRP EISFEVSIVS FAEWSKGEYA TRLSGGTIND EIGEPGSLDS FPAKQASGCM  300
FTPGKRRQCP LTYTEKARIL DSIPFESERP FFKVLMQPTN AGFKCKQLQL PIQFVLRYVK  360
TQCHVILSVP NGRSWNAELR ITPPAGPKCE ARLYKGWREF ANDNNLKVGD VCIFKLLDRP  420
EISFEVSIVR SAEHDSFRGS QDKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-14B3 family protein