PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02675.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family B3
Protein Properties Length: 138aa    MW: 16087.3 Da    PI: 4.9716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02675.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-1727112899
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 + +l+++ l++p kf++++g++   +  + ++ + g +W++ l    ++++++++kGW +F+k   Lk g  ++F+++g+sef  +  +f++
  POO02675.1  27 EETLQQNKLRIPPKFVRKYGEN--LTNSVFVKLPCGSKWKMDL--MEQDNKIWFEKGWPDFAKHYALKRGSLLIFRYEGNSEF--HAVIFDA 112
                 44566677***********977..6667***************..9*********************************9999..7777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MSCEPQGECN QTIFSPETLH FFTIIIEETL QQNKLRIPPK FVRKYGENLT NSVFVKLPCG  60
SKWKMDLMEQ DNKIWFEKGW PDFAKHYALK RGSLLIFRYE GNSEFHAVIF DASTVEIDYP  120
SISVDFDKSN VDLELQTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-28B3 family protein