PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02681.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family B3
Protein Properties Length: 196aa    MW: 22784 Da    PI: 7.5798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-1728112999
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +l+++ l++p kf++++g  ++ s  + ++ + g +W++kl  +kk+++++l++GW +F+k   ++ g +v+F++dg+sef  +  +f++
  POO02681.1  28 ETLQENKLRIPHKFTRKYG--ETLSNSVFVKLPCGSKWKMKL--TKKDNKIWLEEGWPDFAKHYSIRRGSMVMFRYDGNSEF--HAVIFDT 112
                 4566778***********9..458999***************..**********************************9999..7777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSFRHQGDHN QTVFSSGTPH FFSIILEETL QENKLRIPHK FTRKYGETLS NSVFVKLPCG  60
SKWKMKLTKK DNKIWLEEGW PDFAKHYSIR RGSMVMFRYD GNSEFHAVIF DTSTVEIDYP  120
YTPNHLDKPD IDLELRAPKE KVVEDDYVEI LDNLSPCPKR KENASLPCPQ PLKRMRMSPN  180
ECVLENAMSK GDLQSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-28B3 family protein