PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02683.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family B3
Protein Properties Length: 277aa    MW: 31815.2 Da    PI: 9.4716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-1727109896
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 + +l+++ l++p kf++++g  ++ s  + ++ + g +W++kl  + ++++++++kGW +F+k   Lk g +++F+++g+sef     +
  POO02683.1  27 EETLQENKLRIPQKFVRKYG--ETLSNSVFVKLPCGSKWKMKL--TEQDKKIWFEKGWPDFAKHYALKRGSMLTFRYEGNSEF--QAVI 109
                 45566677***********9..458999***************..**********************************9999..5555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MSCGPQGDRS QTKYSSGTPH FFTIILEETL QENKLRIPQK FVRKYGETLS NSVFVKLPCG  60
SKWKMKLTEQ DKKIWFEKGW PDFAKHYALK RGSMLTFRYE GNSEFQAVIF DTSTVEIDYP  120
SIPVVFDKSD IDLELRDPKE EVVEDDSIEI LANLSPCPKA REKSPLPCSQ PHKRIRTSPT  180
DKTQSNSAGP SECLRENSRS KGNLQSSKAE IIGKPDSPSK IDRDKFTTRS QKTDEILVRM  240
RTQVYRSEKV AVLQKAFDFR SDRPHFKVVI QPSYNHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-31B3 family protein