PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO02685.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family B3
Protein Properties Length: 526aa    MW: 60222.4 Da    PI: 10.3791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO02685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1622112299
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 fk+   +d+l+ + l +p+kf++++g  ++ s+ ++++ + g +W++kl  rk  ++++l +GW eFvk   +  g +++F+++g+sef  +  +f++
  POO02685.1  22 FKII-LEDTLQDNKLQVPRKFLNKCG--ETLSTLVSIKLPCGSRWKMKL--RKDHDKFWLDQGWPEFVKHYSIGRGHMLTFRYNGNSEF--HAVIFDT 112
                 4444.478999999***********9..55999****************..**********************************9999..7777765 PP
2B355.88.3e-18232329198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ffkv +++++   + l++p +f  ++ + k++s +++l+ ++g ++W vk+ +  +k+ +  +++GWk F+++n+Lk+gD++vF l ++ +f++ v +f
  POO02685.1 232 FFKVVMQPYYILGKFLSFPANFE-NIYL-KNRSDDVILKVPNGeKTWPVKYVFgVQKKTAPRFRRGWKAFAQDNNLKVGDVCVFVLLKEIKFSFEVVIF 328
                 99********************4.4433.45778******9999*******99755666699***********************99999999999999 PP

                 - CS
          B3  98 r 98 
                 r
  POO02685.1 329 R 329
                 8 PP
3B349.48.4e-164194931998
                 -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 p   a +h +   e+ +++l +++grsW+ ++  r+++ + v+ +GWkeFv +ngL++gD++ F+l + ++ +++v+++r
  POO02685.1 419 PLALAVRHIMT--EG-DVVLSTPNGRSWSAQF--RRRKFAAVICGGWKEFVADNGLEVGDVCNFELLDGTKISFRVSIVR 493
                 55555556333..22.7***************..999999*************************886677777888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MSRSCRGDTD EPKFSSGTPH FFKIILEDTL QDNKLQVPRK FLNKCGETLS TLVSIKLPCG  60
SRWKMKLRKD HDKFWLDQGW PEFVKHYSIG RGHMLTFRYN GNSEFHAVIF DTSTVEIDYP  120
SVPFHFDESN IDGKLRAPKR EVIDRDFIEM LDDLSPRHKA GVKTSLPWSR PQKRMKTSPT  180
GKSGSPARSG RHKSTLIRKR KCEILRCMRT LDRRERLAAL QRTSGFGSEL PFFKVVMQPY  240
YILGKFLSFP ANFENIYLKN RSDDVILKVP NGEKTWPVKY VFGVQKKTAP RFRRGWKAFA  300
QDNNLKVGDV CVFVLLKEIK FSFEVVIFRV GGSLKAPISP AHDETGTPSF RENFHAKQAN  360
VCKSTPWKTS QNTEPQVIRK PYPLAFKKVR ILEKAPFQSE KPCFRVVIQP SYKWNVHVPL  420
ALAVRHIMTE GDVVLSTPNG RSWSAQFRRR KFAAVICGGW KEFVADNGLE VGDVCNFELL  480
DGTKISFRVS IVRVSDDYKG QEAQAGDFAK GKDKPKVDEA VKLETD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-45B3 family protein