PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03250.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 174aa MW: 18650.2 Da PI: 8.3802

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.7	6.2e-46	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+lal+++ POO03250.1 17 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQA 115 7**********************************************************************************************9997 PP DUF260 100 e 100 e POO03250.1 116 E 116 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MKDASAGGGR KQGAPSPCAA CKLLRRRCAQ DCVFAPYFPA DEPQKFANVH KVFGASNVNK 60 MLQELPVHQR GDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDVLQAQL ALAQAEVVHL 120 RVRQNASLSN HGLSPASPSN SGSPSSKLMG SQPKPIFDMD MTVDQASFGE SMWC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-73	LBD family protein