PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03499.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 466aa MW: 50524.1 Da PI: 7.0878

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl POO03499.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l POO03499.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKT DALGSGSGNP KDAANLSHMA QWESARLEAE ARLVRESKLL VTNNNNNIPQ 180 ALPHQLGSAN TNPAHHFINR AGGAVAPPPC LDVLKAWQGA WTKSSNSNNR AECNTLADMI 240 AMDDLESPTS TLNFPDANPH HSFPNMTHVG GFGTTNTTTT TTTHDIHHHH QNNGVESEHN 300 VNGWKSCYST TTTPTITKVV NINDHHHHHH DNNSHMVAPP TPPPEFKERN MDTTNTMSLQ 360 DIAFACTDGG AWFVDGFRAP GSGGAGDSMA VPAGALSNIM EGFADVFVYN PDEPNSAVAA 420 AGENSSNGGG GGDGSCGASG IFEENKSYWN SILNLVNASP AGSPVF

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKT DALGSGSGNP KDAANLSHMA QWESARLEAE ARLVRESKLL VTNNNNNIPQ  180
ALPHQLGSAN TNPAHHFINR AGGAVAPPPC LDVLKAWQGA WTKSSNSNNR AECNTLADMI  240
AMDDLESPTS TLNFPDANPH HSFPNMTHVG GFGTTNTTTT TTTHDIHHHH QNNGVESEHN  300
VNGWKSCYST TTTPTITKVV NINDHHHHHH DNNSHMVAPP TPPPEFKERN MDTTNTMSLQ  360
DIAFACTDGG AWFVDGFRAP GSGGAGDSMA VPAGALSNIM EGFADVFVYN PDEPNSAVAA  420
AGENSSNGGG GGDGSCGASG IFEENKSYWN SILNLVNASP AGSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	1e-108	MYB family protein