PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO03581.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YC
Protein Properties Length: 245aa    MW: 28346.2 Da    PI: 4.9871
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO03581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC133.47.2e-4264168298
       NF-YC   2 lksfwekq........iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                 ++ fw++q        + ++    +h+lPlarik+++kad dvkmisa++P l+skacelfi+eltlrsw+++ee+krrtl+++dia a+ + +  dfl
  POO03581.1  64 MEIFWNQQlldmqnilVCNTVGKSQHQLPLARIKRVMKADGDVKMISADTPLLFSKACELFIMELTLRSWMQTEECKRRTLQRCDIARAIRNDELLDFL 162
                 6789999976644433333344469************************************************************************** PP

       NF-YC  93 vdivpr 98 
                 vd+vp 
  POO03581.1 163 VDVVPL 168
                 ****96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MDMNQSMNFI PSSSNSDPQL PNMMMPMGDS FMLPEYYQQG MMSAKQDAEE ARRSHTKQVQ  60
KQNMEIFWNQ QLLDMQNILV CNTVGKSQHQ LPLARIKRVM KADGDVKMIS ADTPLLFSKA  120
CELFIMELTL RSWMQTEECK RRTLQRCDIA RAIRNDELLD FLVDVVPLSH DHHYGQKEQE  180
STGKNVLDAN ESSYTTAHEP LNLPIMNNFE ENETVPIIQE TPQQFMFDPS MSSAEFHYHF  240
PSKVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.15e-37NF-YC family protein