PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO03583.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 550aa    MW: 61476.9 Da    PI: 4.7673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO03583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.82.4e-801004103308
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL ecA+a+s++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s+ ++y++l++ ++++++ + +      f+evsP+ +f+h++ N a
  POO03583.1 100 RLLKECAKAISDKDSTKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATDSGLRCYRTLTSVADKTRSFDCARRLILKFQEVSPWTTFGHVASNGA 198
                 6899**********************************************************9999986554444444444****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                 Ilea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ ++++            ++e+ +r++kfA+ +gvpfef+v+   +rl +l+ 
  POO03583.1 199 ILEALDGETKLHIIDISNTLCTQWPTLLEALATRNDETPRLKLTVVVTAATVvgggggggGGSVMKEITQRMEKFARLMGVPFEFRVVsELRRLGELTR 297
                 ************************************************998899****9999*************************85555******* PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 e L v+ +Ea+aVn+v +l r       +e+ r++ +++++sl+P++v+vve+ead   ++e+F+  f e+l++y+  f++le+++p++s+e+ ++Ere
  POO03583.1 298 EGLGVQDDEAVAVNCVGALRRAE-----VEDDREAAMRAFRSLKPRIVTVVEEEADFtaTREDFVGCFEECLRFYTLYFEMLEESFPATSNEKLMLERE 391
                 *******************9996.....7777899*******************99866788************************************* PP

        GRAS 289 llgreivnvvacegaerrer 308
                   +r iv v+ac   ++ ++
  POO03583.1 392 -CSRGIVRVLACDDHDQDQD 410
                 .89*********99886655 PP
2GRAS23.75.4e-08446498305356
        GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                   er+e+ ++W+erl++a F pv +s+++ +++k+ll++++ ++g   ++++ 
  POO03583.1 446 CSERREKGKQWSERLKRASFWPVGYSDDVLDDVKALLKRYPsGWGLIHQQQQS 498
                 579**************************************888755554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MDITLFTNIS PKQQTQYYFN SNTNTKHHDQ PIMIISANND QDQTAILLDS IMQTTNHNLP  60
PLPPPPPPPP LPTASTSLSP DSALAAAATE EAAAGKWAPR LLKECAKAIS DKDSTKIHHL  120
LWMLNELASP YGDCDQKLAS YFLQALFCKA TDSGLRCYRT LTSVADKTRS FDCARRLILK  180
FQEVSPWTTF GHVASNGAIL EALDGETKLH IIDISNTLCT QWPTLLEALA TRNDETPRLK  240
LTVVVTAATV VGGGGGGGGG SVMKEITQRM EKFARLMGVP FEFRVVSELR RLGELTREGL  300
GVQDDEAVAV NCVGALRRAE VEDDREAAMR AFRSLKPRIV TVVEEEADFT ATREDFVGCF  360
EECLRFYTLY FEMLEESFPA TSNEKLMLER ECSRGIVRVL ACDDHDQDQD QDHDHQEMDQ  420
DPQEDGNNGS SNNNKISNGS RTTWDCSERR EKGKQWSERL KRASFWPVGY SDDVLDDVKA  480
LLKRYPSGWG LIHQQQQSQA IVGEGQRQQE QQERQLLLHD DDDSSSTSAS AGIYLTWKEE  540
PVVWASAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-121GRAS family protein